diatoms – The Artful Amoeba http://theartfulamoeba.com A blog about the weird wonderfulness of life on Earth Tue, 11 Mar 2014 16:22:24 +0000 en-US hourly 1 https://wordpress.org/?v=4.5.31 Mind the Rock Snot http://theartfulamoeba.com/2010/08/17/mind-the-rock-snot/ http://theartfulamoeba.com/2010/08/17/mind-the-rock-snot/#comments Wed, 18 Aug 2010 03:54:20 +0000 http://theartfulamoeba.com/?p=3531

Creative Commons Thorney¿?

Fly fisher(wo)men everywhere are mourning the loss of a cherished piece of equipment: their felt-soled waders. All too often now, clinging to the felt fibers are the tenacious strands of Didymosphenia geminata (did-em-o-sfeen’-ee-a jem-i-na’-ta), or, for the rest of us, rock snot.

The stuff looks like pre-owned toilet paper and apparently feels like wet cotton, and it’s slowly taking over the freshwater streams of the temperate world, smothering fish, insects, and other aquatic life. It spreads by hitchhiking on the gear of flyfishers, challenging slime molds, dandelions, and jellyfish for the non-human Plans for World Domination Cup. You can read all the gory details in New York Times articles here and here. But hidden inside that slimy brown mass is a work of remarkable beauty.

This.

With the lines of a Stradivarius and the detailing of a Fabergé egg, this baby is a microscopic work of art. If only its macroscopic manifestations could be so beautiful. As you may have guessed, it is a diatom (as covered here), a microscopic glass house (literally (littorally?) made of silicon dioxide) enclosing a little photosynthesizing alga.

At left you see two interesting features: The two long slits, or raphes, through which the diatom can secrete mucilage (aka slime) with which it slides over surfaces, and the porefield, through which it can secrete a mucopolysaccharide (aka slime) stalk that attaches it to a surface. The secretion and aggregation of these stalks is what causes the brown mess of rock snot, not the beautiful fiddle-like head.

In beauty, destruction. In destruction, beauty. This particular destruction brought to you by the otherwise largely upstanding diatoms, conveniently located in this sector of the tree of life. For all the scientific, er, dirt, on rock snot, including a beautiful scanning electron micrograph of the trouble-causing stalks, check out this EPA White Paper.

]]>
http://theartfulamoeba.com/2010/08/17/mind-the-rock-snot/feed/ 10
Diatoms, or The Trouble With Life in Glass Houses http://theartfulamoeba.com/2010/03/28/diatoms-or-the-trouble-with-life-in-glass-houses/ http://theartfulamoeba.com/2010/03/28/diatoms-or-the-trouble-with-life-in-glass-houses/#comments Mon, 29 Mar 2010 00:11:21 +0000 http://frazer.northerncoloradogrotto.com/?p=2824

Diatoms: What Would Result if the Japanese Could Design their Own Microorganisms. These guys are screaming for a collector card set. Image by Rovag, Creative Commons Atribution 3.0 Unported License. Click for link.

Earlier this week I posted a link to Victorian microscope slides that included arranged diatom art. People really seemed to respond to the diatom image I posted with it, so I wanted to talk a little bit more about what diatoms are and a lot about their amazing shells. Diatoms literally live  in glass houses, and as you can imagine, that makes sex, growth, and buoyancy a tricky business. How do you have sex when you live in the architectural equivalent of a microscopic  petri dish? As they say — very carefully.

A diatom is a single-celled organism that is also considered an alga  — for values of algae that include “anything that photosynthesizes(makes food using light) but isn’t a plant or bacterium”. They are in a high-level taxon called Stramenopiles, or Heterokonts, a group that’s a grab bag of eukaryotic(cells with a nucleus) goodness that includes water molds (the oomycetes, a scion of which is responsible for the Irish Potato Famine), the fabulously cool and obscure slime nets (labrinthulids), and the brown algae. Here’s the tree so you can see how everyone’s related. Heterokonts are mostly algae, and the heterokontish algae are mostly diatoms. The name heterokont comes from the trait the group’s common ancestor likely developed of having two unequal propulsive tails called tinsel and whiplash flagella (love the names!), though some groups (including the diatoms) have mostly lost theirs. Believe it or not, the tinsel flagellum (so called because of all the little hairs on it) actually points forward and pulls the cell through the water.

But enough about Heterokonts/Stramenopiles. Diatoms live in pretty much any moist environment, including mud puddles, wet rocks, film on moss, etc., though they are most commonly found in fresh and saltwater. If you’ve ever swallowed lake or seawater, odds are you consumed some unlucky diatoms.

Somewhere along the way, probably in the Triassic or early Jurassic, diatoms discovered that making their shells out of silica (SiO2, aka glass) instead of cellulose, chitin, calcium carbonate or any other mineral/molecule/protein/sugar saved them 8% in energy costs compared to an organic wall and helped them compete in a crowded phytoplankton marketplace. The glass shells of diatoms have an incredible structure: they come in two halves called frustules (again, love the name!) that fit together like a pill box. For you engineers and artists in the audience, here’s your 1,000 words:

Schematic of diatom frustules. (A,B) Centric Diatoms. (A) girdle view, (B) valve view. (C,D,E) Pennate Diatom. (C) broad view, (D) valve view, (E) narrow girdle view (transverse section). Cupp, E.E. (1943). Marine Plankton Diatoms of the West Coast of North America. Bull. Scripps. Inst. Oceanogr. 5: 1-238 Image by Matt-eee, Creative Commons Attribution 3.0 Unported License. Click for link.

As may be obvious, centric diatoms are radially symmetrical, and pennate diatoms are bilaterally symmetrical (like us). The valves are the face plates and the girdles are the sides.

Here’s the problem with this system: when a diatom gets ready to divide, its shells pull apart and one goes with each daughter cell. Once these glass shells are formed, they can’t really be . . . er . . . expanded. With glass, you get what you get. One of the daughter cells gets the big frustule or epitheca, and one gets the little frustule that fits in it — the hypotheca. They both grow new shells that fit *inside* whatever shell they got. If you think about this, you’ll realize that one of these two daughter cells got the raw end of the deal — it can never get any bigger than its reduced-size shell. And one of its daughters will get an even rawer deal.

Carried out indefinitely, the cells keep dividing until they’re so small they simply die. That does not sound like the recipe for an evolutionary WIN. Diatoms could, I suppose, get by on the part of their population that always inherits the biggest shell. But that’s an increasingly small proportion of the population, and let’s face it: after a while that frustrule is starting to seem a bit shabby, out-of date, and funny-smelling.  So what is the escape from this evolutionary dead-end? I’m glad you asked!

Ta-Da!

Notice that the sperm have flagella that point *forward*. Those are the tinsel flagella, that pull the cell behind them. Image by Matt-eee, Creative Commons Attribution 3.0 Unported license

Sex! Sex is the answer! (I know what you’re thinking: when is it not?) You have sex, grow your membrane out into a diatom shipyard, then build an entirely new and full-sized frustule inside. When you’re finished, you simply cast off your old-and-busted frustules and membranes, and Voila! New Diatom hotness!

The above solution is what the centric, or radially-valved diatoms do. Here’s what the rest of the diatoms do (warning: graphic diatom sex image):

Hey, baby, wanna swap nuclei? The life cycle of the pennate (not-radial) diatoms. Image by Matt, Creative Commons Attribution 3.0 Unported License. Click for link.

Incidentally, like women of a certain age, diatoms also have a biological clock. If they miss their time to mate and make a new initial cell, they just keep dividing until they get so small they die all alone. Aww. Sad diatom.

So why do these utilitarian glass shells have all these beautiful shapes and forms? I wish I knew. What purpose natural selection has found in them I can’t say, but I can say I appreciate the results — and I’m glad I don’t have to live in one.
]]>
http://theartfulamoeba.com/2010/03/28/diatoms-or-the-trouble-with-life-in-glass-houses/feed/ 8
Microscopes + Victorians = Match Made in Heaven http://theartfulamoeba.com/2010/03/22/diatoms-victorians-match-made-in-heaven/ http://theartfulamoeba.com/2010/03/22/diatoms-victorians-match-made-in-heaven/#comments Tue, 23 Mar 2010 03:01:20 +0000 http://frazer.northerncoloradogrotto.com/?p=2786

Diatoms: the tinker toys of the microbial world. MacGyver could build a bomb out of the components on this slide. A modern microscopic image of diatoms, artfully arranged. Image by Wipeter, Creative Commons Attribution ShareAlike 3.0 License. Click for link.

There aren’t many things about the Victorian world I would have liked, but their impulse to combine nature and art is one thing I could get solidly behind. Don’t miss this slide show over at SEED Magazine highlighting the work of Victorian prepared slide makers. This was a time when the general public actually enjoyed scientific pursuits like looking at things under a microscope in their spare time, so much so that they could actually support an entire diatom art sweatshop industry. Seriously. It happened.

Enjoy!

]]>
http://theartfulamoeba.com/2010/03/22/diatoms-victorians-match-made-in-heaven/feed/ 1